Sfp1 plays a key role in yeast ribosome biogenesis

I Fingerman, V Nagaraj, D Norris, AK Vershon - Eukaryotic cell, 2003 - Am Soc Microbiol
Sfp1, an unusual zinc finger protein, was previously identified as a gene that, when
overexpressed, imparted a nuclear localization defect. sfp1 cells have a reduced size and a …

Role of Different Catalysts on a Direct Growth Carbon Nanotube for Supercapacitor Electrodes

M Isacfranklin, Y Rathinam, R Ganesan… - Energy & …, 2023 - ACS Publications
Supercapacitors are engaged in the search for efficient electrode materials to convene
hybrid vehicles' utility requirements and renewable energy sources. State-of-art …

Translation inhibition and resource balance in the TX-TL cell-free gene expression system

VH Nagaraj, JM Greene, AM Sengupta… - Synthetic …, 2017 - academic.oup.com
Quantifying the effect of vital resources on transcription (TX) and translation (TL) helps to
understand the degree to which the concentration of each resource must be regulated for …

Locus dependence in epigenetic chromatin silencing

S Mukhopadhyay, VH Nagaraj, AM Sengupta - Biosystems, 2010 - Elsevier
Current biological models of epigenetic switches built on chromatin modifications lead to
strong constraints on the repertoire of dynamic behaviors for the system. We use the …

[HTML][HTML] Combined analysis of expression data and transcription factor binding sites in the yeast genome

VH Nagaraj, RA O'Flanagan, AR Bruning, JR Mathias… - BMC genomics, 2004 - Springer
Background The analysis of gene expression using DNA microarrays provides genome
wide profiles of the genes controlled by the presence or absence of a specific transcription …

[HTML][HTML] OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif

A Drawid, N Gupta, VH Nagaraj, C Gélinas… - BMC …, 2009 - Springer
Background DNA sequence binding motifs for several important transcription factors happen
to be self-overlapping. Many of the current regulatory site identification methods do not …

[HTML][HTML] Breaking an Epigenetic Chromatin Switch: Curious Features of Hysteresis in Saccharomyces cerevisiae Telomeric Silencing

VH Nagaraj, S Mukhopadhyay, A Dayarian… - PLoS …, 2014 - journals.plos.org
In addition to gene network switches, local epigenetic modifications to DNA and histones
play an important role in all-or-none cellular decision-making. Here, we study the dynamical …

[HTML][HTML] Better estimation of protein-DNA interaction parameters improve prediction of functional sites

VH Nagaraj, RA O'Flanagan, AM Sengupta - BMC biotechnology, 2008 - Springer
Background Characterizing transcription factor binding motifs is a common bioinformatics
task. For transcription factors with variable binding sites, we need to get many suboptimal …

Yeast cell-free system that catalyses joint-molecule formation in a Rad51p-and Rad52p-dependent fashion

V NAGARAJ, D NORRIS - Biochemical Journal, 2000 - portlandpress.com
One of the central reactions of homologous recombination is the invasion of a single strand
of DNA into a homologous duplex to form a joint molecule. Here we describe the isolation of …

[HTML][HTML] Information processing by community health nurses using mobile health (mHealth) tools for early identification of suicide and depression risks in Fiji Islands

VL Patel, M Halpern, V Nagaraj, O Chang… - BMJ health & care …, 2021 - ncbi.nlm.nih.gov
Objectives High rates of depression and suicide and a lack of trained psychiatrists have
emerged as significant concerns in the low-income and middle-income countries (LMICs) …