Sfp1 plays a key role in yeast ribosome biogenesis
I Fingerman, V Nagaraj, D Norris, AK Vershon - Eukaryotic cell, 2003 - Am Soc Microbiol
Sfp1, an unusual zinc finger protein, was previously identified as a gene that, when
overexpressed, imparted a nuclear localization defect. sfp1 cells have a reduced size and a …
overexpressed, imparted a nuclear localization defect. sfp1 cells have a reduced size and a …
Role of Different Catalysts on a Direct Growth Carbon Nanotube for Supercapacitor Electrodes
M Isacfranklin, Y Rathinam, R Ganesan… - Energy & …, 2023 - ACS Publications
Supercapacitors are engaged in the search for efficient electrode materials to convene
hybrid vehicles' utility requirements and renewable energy sources. State-of-art …
hybrid vehicles' utility requirements and renewable energy sources. State-of-art …
Translation inhibition and resource balance in the TX-TL cell-free gene expression system
Quantifying the effect of vital resources on transcription (TX) and translation (TL) helps to
understand the degree to which the concentration of each resource must be regulated for …
understand the degree to which the concentration of each resource must be regulated for …
Locus dependence in epigenetic chromatin silencing
Current biological models of epigenetic switches built on chromatin modifications lead to
strong constraints on the repertoire of dynamic behaviors for the system. We use the …
strong constraints on the repertoire of dynamic behaviors for the system. We use the …
[HTML][HTML] Combined analysis of expression data and transcription factor binding sites in the yeast genome
VH Nagaraj, RA O'Flanagan, AR Bruning, JR Mathias… - BMC genomics, 2004 - Springer
Background The analysis of gene expression using DNA microarrays provides genome
wide profiles of the genes controlled by the presence or absence of a specific transcription …
wide profiles of the genes controlled by the presence or absence of a specific transcription …
[HTML][HTML] OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif
A Drawid, N Gupta, VH Nagaraj, C Gélinas… - BMC …, 2009 - Springer
Background DNA sequence binding motifs for several important transcription factors happen
to be self-overlapping. Many of the current regulatory site identification methods do not …
to be self-overlapping. Many of the current regulatory site identification methods do not …
[HTML][HTML] Breaking an Epigenetic Chromatin Switch: Curious Features of Hysteresis in Saccharomyces cerevisiae Telomeric Silencing
VH Nagaraj, S Mukhopadhyay, A Dayarian… - PLoS …, 2014 - journals.plos.org
In addition to gene network switches, local epigenetic modifications to DNA and histones
play an important role in all-or-none cellular decision-making. Here, we study the dynamical …
play an important role in all-or-none cellular decision-making. Here, we study the dynamical …
[HTML][HTML] Better estimation of protein-DNA interaction parameters improve prediction of functional sites
VH Nagaraj, RA O'Flanagan, AM Sengupta - BMC biotechnology, 2008 - Springer
Background Characterizing transcription factor binding motifs is a common bioinformatics
task. For transcription factors with variable binding sites, we need to get many suboptimal …
task. For transcription factors with variable binding sites, we need to get many suboptimal …
Yeast cell-free system that catalyses joint-molecule formation in a Rad51p-and Rad52p-dependent fashion
V NAGARAJ, D NORRIS - Biochemical Journal, 2000 - portlandpress.com
One of the central reactions of homologous recombination is the invasion of a single strand
of DNA into a homologous duplex to form a joint molecule. Here we describe the isolation of …
of DNA into a homologous duplex to form a joint molecule. Here we describe the isolation of …
[HTML][HTML] Information processing by community health nurses using mobile health (mHealth) tools for early identification of suicide and depression risks in Fiji Islands
Objectives High rates of depression and suicide and a lack of trained psychiatrists have
emerged as significant concerns in the low-income and middle-income countries (LMICs) …
emerged as significant concerns in the low-income and middle-income countries (LMICs) …